Does Colonic Irrigation Eliminate Good Bacteria?

A study in Japan suggests that the existing evidence does not support the claim that colonics destroy beneficial gut bacteria permanently; rather, any impacts are likely temporary and part of the dynamic balance of the gut ecosystem.

In this article, we have compiled a few essential points from the study.

The myth that colonic irrigation destroys good gut bacteria lacks scientific backing and oversimplifies the complexity of the human gut microbiome. Colonics, also known as colon hydrotherapy, involves flushing the colon with water to remove waste.

Concerns about negatively impacting beneficial gut bacteria stem from the procedure’s potential to wash out intestinal contents, including microbiota. However, a study conducted in Japan counters this myth:

  1. Resilience of Gut Microbiome: The gut microbiome is highly resilient and capable of recovering from disturbances. While colonic irrigation may temporarily alter the composition of the gut microbiota, these changes are typically transient. The gut ecosystem can quickly rebound, and beneficial bacteria can repopulate the gut.
  2. Lack of Direct Evidence: There is limited scientific research specifically addressing the long-term impact of colonics on the gut microbiome. The assumption that colonics significantly and permanently destroy beneficial gut bacteria is not supported by robust clinical evidence.
  3. Comparative Perspective: Other medical and lifestyle factors, such as antibiotic use and dietary choices, have a more pronounced and well-documented impact on gut microbiota than colonics. Antibiotics, for example, can significantly reduce microbial diversity and deplete beneficial bacteria, yet the microbiome can still recover over time.
  4. Potential Benefits: Some proponents of colonics argue that by removing waste and toxins from the colon, the procedure can indirectly benefit gut health. However, these claims should be approached with caution due to the lack of substantial scientific validation.
  5. Professional Guidance: When performed under the guidance of healthcare professionals and in specific circumstances, colonics are generally considered safe for most people. Any potential risks, including temporary alterations to the gut microbiome, are typically weighed against the perceived benefits on a case-by-case basis.


It’s important to consult healthcare professionals before undergoing colonic irrigation, especially for individuals with specific health conditions or concerns about their gut microbiome.

The existing evidence does not support the claim that colonics destroy beneficial gut bacteria permanently; rather, any impacts are likely temporary and part of the dynamic balance of the gut ecosystem.


Source: The Influence of Colonic Irrigation on Human Intestinal Microbiota by Yoko Uchiyama-Tanaka

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